species:   Clros
pid:       PID2264
parent:    cro-mir-56
paralog:   c
locus:     CADEHS020000645.2:2684947-2685036
matures:   ['UACGUUCGUAUUGCCAGUAUG', 'UGGUGGUUAUGCAAACGUAGU']
srr:       ERR5950923
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram CADEHS020000645.2:2684947-2685036

0 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

*********************                                              ***********************
UGGUGGUUAUGCAAACGUAGUCCCGGUCAAGACGUUCAAGAGGCUCAGCUUGCUCUAAUUGAUCGGGACUACGUUCGUAUUGCCAGUAUG
((.((((.((((.(((((((((((((((((...(..((((........))))..)...))))))))))))))))).)))).)))).))..
---------------------------------------------------------------------UACGUUCGUAUUGCCAGUAUG l=21 a=3 c
UGGUGGUUAUGCAAACGUAGU--------------------------------------------------------------------- l=21 a=0 c*
---------------------------------------------------------------------UACGUUCGUAUUGCCAGUAUG l=21 a=3 ma
UGGUGGUUAUGCAAACGUAGU--------------------------------------------------------------------- l=21 a=0 ma*

---------------------------------------------------------------------UACGUUCGUAUUGCCAGUAUG l=21 a=3 (c,ma)

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-111
